Publications
We have published
Our founders have published work in fields varying from Epigenetics and Systems Biology to Clinical Nutrition and Maternal Health. You can find a complete list of publications here.
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Diabetes
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Systems Biology
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Epigenetics
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Clinical Nutrition
| S.No. | Publications | Categories |
| 1 | Vionnet N, Stoffel N, Takeda K, Bell GI, Zouali H, Lesage S, Velho G, Passa PH, Iris F, Froguel P, and Cohen D. (1992) Nonsense mutation in the glucokinase gene causes early onset non-insulin dependent diabetes mellitus. Nature, 356:721-722. (4*) | DIABETES |
| Abderrahim H, Sambucy J L , Iris F, Ougen P, Billault A, Chumakov I M , Dausset J, Cohen D, Le Paslier D: Cloning the human major histocompatibility complex in YACs. Genomics. 1994;23(3):520-7. doi: 10.1006/geno.1994.1538. | GENETICS | |
| 2 | Iris F, Bougueleret L, Prieur S, Rodriguez-Tome P, Caterina, D, Perrot V, Primas G, Dausset J and Cohen D.(1993) Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment. Nature Genet. 3:137-145. (5*) | GENETICS |
| 3 | Glücksmann-Kuis MA, Iris F, Tyber O, Woolf EA, Bougueleret L, Deng N, Alperin GD, Hawkins F, Munro C, Lakey N, Duyk G, Schneider MC, Geng L, Zhang F, Zhao Z. et al (1995) Polycystic Kidney Disease: the complete structure of the PKD1 gene and its protein. Cell 81:289-298. | GENETICS |
| Gimeno R.E, Dembski M, Weng X, Deng N, Shyjan A.W , Gimeno C.J , Iris F, Ellis C.J , Woolf E.A, Tartaglia L.A: Cloning and characterization of an uncoupling protein homolog: a potential molecular mediator of human thermogenesis. Diabetes. 1997; 46(5):900-6. doi: 10.2337/diab.46.5.900. | GENETICS | |
| 4 | Gadal F, Bozic C, Pillot-Brochet C, Malinge S, Wagner S, Le Cam A, Buffat L, Crepin M and Iris F. (2003) Integrated transcriptome analysis of the cellular mechanisms associated with Ha-ras dependent malignant transformation of the human breast epithelial MCF-7 cell-line. NAR. 39:5789-5804. | SYSTEMS BIOLOGY |
| 5 | Gadal F, Bozic C, Pillot-Brochet C, Malinge S, Wagner S, Le Cam A, Vicenzi J, Buffat L, Perret G, Iris F and Crepin M. (2005) Integrative analysis of gene expression patterns predicts specific modulations of defined cell functions by estrogen and tamoxifen in MCF7 cells. JMol.Endocrinol.34:61-75. | SYSTEMS BIOLOGY |
| 6 | Iris F, Gea M, Lampe PH and Santamaria P.(2009) Production and implementation of predictive biological models. Med Sci. 25: 608-16. | SYSTEMS BIOLOGY |
| 7 | Pouillot F, Blois H & Iris F (2010) Genetically engineered virulent phage banks in the detection and control of emergent pathogenic bacteria. Biosecur Bioterror. 8:155-69. | SYSTEMS BIOLOGY |
| 8 | Iris F, Filiou M & Türck C.W (2014): Differential Proteomics Analyses Reveal Anxiety-Associated Molecular and Cellular Mechanisms in Cingulate Cortex Synapses. Am. J. Psychiatry Neurosci. 2:25-42 | SYSTEMS BIOLOGY |
| 9 | Iris F, Scott RS and Mann JI: Genetic factors in Diabetes Mellitus. In “Clinical Diabetes Mellitus, a problem-oriented approach.” 2d edition. JK Davidson, Ed., pp 58-67, Thieme Medical Publishers Inc. New York,1991. | DIABETES |
| 10 | Iris F: Optimised methods for large scale shot-gun DNA sequencing in Alu-rich genomic regions. In “Automated DNA sequencing and analysis.” M.D Adams, C Field and J.C. Venter Eds., pp 199-209, Academic Press Ltd, 1993. | GENETICS |
| 11 | Gadal F, Bozic C, Pillot-Brochet C, Malinge S, Wagner S, Le Cam A, Vicenzi J, Buffat L, Perret G, Iris F and Crepin M. Identification and computer-assisted integration into biological pathways of modulated gene expressions patterns. In “Bioinformatics: New Research”, Volume 1. Yan P.V Ed., pp 81-100. Nova Science Publishers, New York, 2005. | SYSTEMS BIOLOGY |
| 12 | Iris F: Biological modelling in the discovery and validation of cognitive dysfunctions biomarkers. In “Biomarkers for psychiatric disorders”. C.W. Turck Ed., pp 473-522. Springer, New York, 2008. | SYSTEMS BIOLOGY |
| 13 | Türck CW and Iris F. Proteome-Based Pathway Modelling of Psychiatric Disorders. Pharmacopsychiatry. 2011; 44 Suppl 1:S54-61. | SYSTEMS BIOLOGY |
| 14 | Iris F: Psychiatric Systems Medicine: Closer at Hand than Anticipated but not with the Expected Portrait. Pharmacopsychiatry. 2012; 45 Suppl 1:S12-21. | SYSTEMS BIOLOGY |
| 15 | Iris F, Gea M, Lampe P-H, and Querleux B: Heuristic Modeling Applied to Epidermal Homeostasis. In “Computational Biophysics of the Skin”. B. Querleux Ed., pp.461-524. Jenny Stanford Publishing, 2014. | SYSTEMS BIOLOGY |
| 16 | Pandit P, Galande S, Iris F. Maternal malnutrition and anaemia in India: dysregulations leading to the ‘thin-fat’ phenotype in newborns. J Nutr Sci. 2021;10:e91. Published 2021 Oct 11. doi:10.1017/jns.2021.83 | SYSTEMS BIOLOGY |
| Iris F, Beopoulos A, Gea M:How scientific literature analysis yields innovative therapeutic hypothesis through integrative iterations.Curr Opin Pharmacol. 2018; 42:62-70. DOI: 10.1016/j.coph.2018.07.005 | SYSTEMS BIOLOGY | |
| Bessiere B, Iris F, Milet A, Beopoulos A, Billoet C, Farjot G: A new mechanistic approach for the treatment of chronic neuropathic pain with nitrous oxide integrated from a systems biology narrative review. Med Gas Res. 2021; 11(1):34-41. doi: 10.4103/2045-9912.310058. | SYSTEMS BIOLOGY | |
| Beopoulos A, Gea M, Fasano A, Iris F: Autonomic Nervous System Neuroanatomical Alterations Could Provoke and Maintain Gastrointestinal Dysbiosis in Autism Spectrum Disorder (ASD): A Novel Microbiome-Host Interaction Mechanistic Hypothesis. Nutrients. 2021; 14(1):65. doi: 10.3390/nu14010065. | SYSTEMS BIOLOGY | |
| 17 | Bhat DS, L Gruca, Bennet C, Katre P, Kurpad A, Yajnik CS, Kalhan SC. Evaluation of tracer labelled methionine load test in vitamin B-12 deficient adolescent women. PLOS ONE, 2018. women. PLoS ONE 13(5):e0196970. | CLINICAL NUTRITION |
| 18 | Katre P, Joshi S, Bhat D, Deshmukh M, Gurav N, Pandit S, Lubree H, Marczewski S, Bennett C, Yajnik CS, Kalhan SC. Effect of multinutrient insufficiency on markers of one carbon metabolism in young women: response to a methionine load. Eur. J. Clin. Nutr, 2015 Sep 16. doi: 10.1038/ejcn.2015.155. [Epub ahead of print]. | CLINICAL NUTRITION |
| 19 | Yajnik CS, Katre P, Joshi S M, Kumaran K, Bhat DS, Lubree H, Memane N, Kinare A, Pandit A, Bhave S, Bavdekar A and Fall CH. Fall. Higher glucose, insulin and insulin resistance (HOMA-IR) in childhood predict adverse cardiovascular risk in early adulthood: the Pune Children’s Study. Diabetologia. 2015; 58: 1626–1636. | DIABETES |
| 20 | Yajnik CS, Chandak GR, Joglekar C, Katre P, Bhat DS, Singh SN, Janipalli CS, Refsum H, Ghattu K, Veena S, Osmond C, Fall CH. Maternal homocysteine in pregnancy and offspring birthweight: epidemiological associations and Mendelian randomization analysis Int. J. Epidemiol. 2014, 43: 1487-1497. | CLINICAL NUTRITION |
| 21 | Joshi S, Katre P, Kumaran K, Joglekar C, Osmond C, Bhat DS, Lubree H, Pandit A, Yajnik CS, Fall CH. Tracking of cardiovascular risk factors from childhood to young adulthood – the Pune Children’s Study. Int J Cardiol. 2014, 175:176-178. | CLINICAL NUTRITION |
| 22 | Rush EC, Katre P, Yajnik CS. Vitamin B12: one carbon metabolism, fetal growth and programming for chronic disease. Eur J Clin Nutr. 2014, 68: 2-7. | CLINICAL NUTRITION |
| 23 | Deshmukh U, Katre P, Yajnik CS. Influence of maternal vitamin B12 and folate on growth and insulin resistance in the offspring. Nestle Nutr Inst Workshop Ser. 2013; 74:145-156. | MATERNAL AND CHILD HEALTH |
| 24 | Lubree H, Katre P, Joshi S, Bhat DS, Deshmukh U, Memamne N, Otive S, Rush E, Yajnik CS. Child’s homocysteine concentration at 2 years is influenced by pregnancy vitamin B12 and folate status. J Dev Orig Health Dis. 2012, 3: 32–38. | MATERNAL AND CHILD HEALTH |
| 25 | Hardikar P, Joshi S, Bhat DS, Raut D, Katre P, Lubree HG, Jere A, Pandit A, Fall CH, Yajnik CS. Spuriously High Prevalence of Prediabetes Diagnosed by HbA1c in Young Indians Partly Explained by Hematological Factors and Iron Deficiency Anemia. Diabetes Care. 2012, 35:797-802. | DIABETES |
| 26 | Bhate V, Joshi S, Ladkat R, Deshmukh U, Lubree H, Katre P, Bhat D, Rush E, Yajnik CS. Vitamin B12 and folate during pregnancy and offspring motor, mental and social development at 2 years of age. J Dev Orig Health Dis. 2012, 3: 123–130. | MATERNAL AND CHILD HEALTH |
| 27 | Naik S, Joglekar C, Bhat D, Lubree H, Rege S, Raut K, Katre P, Rush E, Yajnik C. Marked Gender Difference in Plasma Total Homocysteine Concentrations in Indian Adults with low Vitamin B12. Int J Vitam Nutr Res. 2011; 81:306-316. | CLINICAL NUTRITION |
| 28 | Katre P, Bhat D, Lubree H, Otiv S, Joshi S, Joglekar C, Rush E, Yajnik C. Vitamin B12 and folic acid supplementation and plasma total homocysteine concentrations in pregnant Indian women with low B12 and high folate status. Asia Pac J Clin Nutr 2010;(19): 335-343. | MATERNAL AND CHILD HEALTH |
| 29 | Khare S, Katre P, and Galande S. Epigenetic Regulation of Islet Development and Regeneration. In ‘Pancreatic Islet Biology’, Editor: Anandwardhan Hardikar, To be published in Nov, 2016 by Springer. | EPIGENETICS |
| 30 | Katre P and Yajnik CS (2015). Influence of Early Life Environment on Risk of Non-Communicable Diseases (NCDs) in Indians: Pune Experience. Sight and Life, 2015, VOL 29(1) | MATERNAL AND CHILD HEALTH |
| 31 | Yajnik CS, Deshmukh U, Katre P. (2016). Vitamin B12 Deficiency in Developing and Newly Industrialising Countries For the book titled: Vitamin B12: advances and insights (Accepted for Publication). Science Publishers. Editor Dr Rima Obeid, Aarhus University, Denmark. | CLINICAL NUTRITION |
| 32 | Khare SP, Shetty A, Biradar R, Patta I, Sathe A, Reddy PC, Chen Z, Lahesmaa R and Galande S*. (2019) NF-kB signaling and IL-4 signaling regulate SATB1 expression via alternative promoter usage during Th2 differentiation. Frontiers in Immunology 2019 Apr 2;10:667. doi: 10.3389/fimmu.2019.00667. eCollection 2019. | EPIGENETICS |
| 33 | Tripathi ST*, Välikangas T*, Shetty A*, Khan MM, Bhosale SD, Moulder R, Komsi E, Salo V, Albuquerque RSD, Rasool O, Galande S, Elo LE#, and Lahesmaa R#. (2019) Quantitative mass spectrometry-based proteomics reveals the dynamic protein landscape during initiation of human Th17 cell polarization. iScience;11:334-355. doi: 10.1016/j.isci.2018.12.020. Epub 2018 Dec 26. | EPIGENETICS |
| 34 | Naik R and Galande S#. (2018) SATB family chromatin organizers as master regulators of tumor progression. Oncogene 38:1989-2004. | GENETICS |
| 35 | Mir R, Sharma A, Pradhan SJ, Galande S#. (2018) Regulation of transcription factor SP1 by β-catenin destruction complex modulates Wnt response. Mol Cell Biol 38:pii: e00188-18. doi: 10.1128/MCB.00188-18. Print 2018 Nov 15. | EPIGENETICS |
| 36 | Muralidharan B, Keruzore M, Pradhan S, Roy B, Shetty A, Kinare A, D’souza L, Maheshwari U, Karmodiya K, Suresh A, Galande S, Bellefroid E, and Tole S. (2017) Dmrt5, a novel neurogenic factor, reciprocally regulates Lhx2 to control the neuron-glia cell fate switch in the developing hippocampus. J Neurosci. 37:11245-11254. | EPIGENETICS |
| 37 | Muralidharan B, Khatri Z, Maheshwari U, Gupta R, Roy B, Pradhan S, Karmodiya K, Padmanabhan H, Shetty A, Balaji C, Kolthur-Seetharam U, Macklis J, Galande S, and Tole S. (2017) Lhx2 interacts with the NuRD complex and regulates cortical neuron subtype determinants Fezf2 and Sox11. J Neurosci. 37:194-203. | EPIGENETICS |
| 38 | Gottimukkala KP, Jangid R, Patta I, Sultana DA, Sharma A, Misra-Sen J, and Galande S#. (2016) Regulation of SATB1 during thymocyte development by TCR signaling. Mol. Immunol. 2016 Jul 22;77:34-43. | EPIGENETICS |
| 39 | Pusalkar M, Ghosh S, Jaggar M, Husain BF, Galande S, Vaidya VA. (2016) Acute and Chronic Electroconvulsive Seizures (ECS) Differentially Regulate the Expression of Epigenetic Machinery in the Adult Rat Hippocampus. 2016; Int J Neuropsychopharmacol. 2016 May 17. pii: pyw040. doi: 10.1093/ijnp/pyw040. [Epub ahead of print]. | EPIGENETICS |
| 40 | Reddy PC, Sinha I, Kelkar A, Habib F, Pradhan SJ, Sukumar R, and Galande S#. (2015) Comparative sequence analyses of genome and transcriptome reveal novel transcripts and variants in the Asian elephant Elephas maximus. J Biosci. 40:891-907. | EPIGENETICS |
| 41 | Pusalkar M, Suri D, Kelkar A, Bhattacharya A, Galande S, and Vaidya VA. (2015) Early stress evokes dysregulation of histone modifiers in the medial prefrontal cortex across the life span. Dev. Psychobiol. 58:198-210. | EPIGENETICS |
| 42 | Karmodiya K#, Pradhan SJ, Joshi B, Jangid R, Reddy PC, Galande S. (2015) A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression. Epigenetics Chromatin. 2015 Sep 17;8:32. doi: 10.1186/s13072-015-0029-1. eCollection 2015. | EPIGENETICS |
| 43 | Hardikar AA#, Satoor SN, Karandikar MS, Joglekar MV, Puranik AS, Wong W, Kumar S, Limaye A, Bhat DS, Januszewski A, Umrani MR, Ranjan AK, Apte K, Yajnik P, Bhonde RR, Galande S, Keech AC, Jenkins AJ, and Yajnik CS. (2015) Susceptibility to obesity and diabetes following multigeneration undernutrition is not reversed by two generations of nutrient availability. Cell Metab. 22:312-319. | CLINICAL NUTRITION |
| 44 | Mir R, Pradhan SJ, Patil P, Mulherkar R and Galande S#. (2015) Wnt/β-catenin signaling regulated SATB1 promotes colorectal cancer tumorigenesis and progression. Oncogene. 35:1679-1691. | GENETICS |
| 45 | Karmodiya K#, Krishanpal A, Muley V, Pradhan SJ, Bhide Y, and Galande S. (2014) Camello, a novel family of Histone Acetyltransferases that acetylate histone H4 and is essential for zebrafish development. Sci Rep. 4:6076. doi: 10.1038/srep06076. | EPIGENETICS |
| 46 | Suri D, Veenit V, Sarkar A, Thiagarajan D, Kumar A, Nestler EJ, Galande S, Vaidya VA. (2012) Early Stress Evokes Age-Dependent Biphasic Changes in Hippocampal Neurogenesis, Bdnf Expression, and Cognition. Biol Psychiatry. 73:658-666. | EPIGENETICS |
| 47 | Mir R, Pradhan SJ, Galande S#. (2012) Chromatin organizer SATB1 as a novel molecular target for cancer therapy. Curr Drug Targets. 13:1603-1615. | GENETICS |
| 48 | Burute M, Gottimukkala KP, Galande S#. (2012) Chromatin organizer SATB1 is an important determinant of T cell differentiation. Immunol. Cell Biol. 90:852-859. | EPIGENETICS |
| 49 | Khare SP, Habib F, Sharma R, Gadewal N, Gupta S#, Galande S#. (2012) HIstome–a relational knowledgebase of human histone proteins and histone modifying enzymes. Nucleic Acids Res. 40(Database issue):D337-342. | GENETICS |
| 50 | Khare S, Katre P, and Galande S#. Epigenetic Regulation of islet development and regeneration, In ‘Pancreatic Islet Biology’ Edited by: Dr. Anandwardhan Hardikar, Published by Springer, 2016. | EPIGENETICS |
| *Equal contribution #Corresponding author |